A Python Framework for Modeling and Analysis of Signaling Systems
Project description
BioMASS
BioMASS is a computational framework for modeling and analysis of biological signaling systems in Python.
- Documentation: https://biomass-core.readthedocs.io
- Source code: https://github.com/biomass-dev/biomass
- Bug reports: https://github.com/biomass-dev/biomass/issues
It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
Installation
The BioMASS library is available at the Python Package Index (PyPI).
$ pip install biomass
BioMASS supports Python 3.7 or newer.
Reference
Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers 12, 2878 (2020). https://doi.org/10.3390/cancers12102878
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