BioMASS is a computational framework for modeling and analysis of biological signaling systems in Python.
- Documentation: https://biomass-core.rtfd.io
- Source code: https://github.com/biomass-dev/biomass
- Bug reports: https://github.com/biomass-dev/biomass/issues
- Citing in your work: https://biomass-core.rtfd.io/en/latest/citing.html
It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
Installation
The BioMASS library is available at the Python Package Index (PyPI).
$ pip install biomass
BioMASS supports Python 3.7 or newer.
References
-
Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers 12, 2878 (2020). https://doi.org/10.3390/cancers12102878
-
Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
Author
License
1 maintainer
Metadata
1 maintainer
Release files for biomass 0.7.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biomass-0.7.2.tar.gz | 100.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biomass-0.7.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 234.9 kB
Release files / biomass-0.7.2.tar.gz
| Download URL | biomass-0.7.2.tar.gz |
|---|---|
| Size | 100.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
e43aa7b414b05c4af381bf51bff7ebc859a8f7ad67b401bc6e0a2064e4d76b28
|
|
BLAKE2b-256 checksum How to use checksums |
eaa6df90fa8d3d224fe8d2708a74eb26b59ec0f05700dfebe3dfaa6ff26a4bda
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.4
|
Release files / biomass-0.7.2-py3-none-any.whl
| Download URL | biomass-0.7.2-py3-none-any.whl |
|---|---|
| Size | 134.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
56d84f6cf6c6deed8f5b133638af772577e1cfc24287f6edfe201730b005e45d
|
|
BLAKE2b-256 checksum How to use checksums |
4461247310a8edebf11c074c8de1fb4d8eaf7b89b2308f76cecb8c35dccd5507
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.4
|
