BioMASS is a computational framework for modeling and analysis of biological signaling systems in Python.
- Documentation: https://biomass-core.rtfd.io
- Source code: https://github.com/biomass-dev/biomass
- Bug reports: https://github.com/biomass-dev/biomass/issues
- Citing in your work: https://biomass-core.rtfd.io/en/latest/citing.html
It provides useful tools for numerical simulation, parameter estimation, network analysis, and result visualization.
Installation
The BioMASS library is available at the Python Package Index (PyPI).
$ pip install biomass
BioMASS supports Python 3.7 or newer.
:ledger: Note: You will need to manually install Graphviz (version 2.42 or later).
References
-
Imoto, H., Zhang, S. & Okada, M. A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data—Application to the ErbB Receptor Signaling Pathway. Cancers 12, 2878 (2020). https://doi.org/10.3390/cancers12102878
-
Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
Author
License
1 maintainer
Metadata
1 maintainer
Release files for biomass 0.9.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| biomass-0.9.0.tar.gz | 125.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biomass-0.9.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 288.5 kB
Release files / biomass-0.9.0.tar.gz
| Download URL | biomass-0.9.0.tar.gz |
|---|---|
| Size | 125.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
0ccdffef789ec04ca4dbebfbd7024b6de4baf02f8fb593bb3ced6103b9af831b
|
|
BLAKE2b-256 checksum How to use checksums |
c54b57ace527dd998227bdf91261e452b2117177219569716a9de5a674c1e784
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.5
|
Release files / biomass-0.9.0-py3-none-any.whl
| Download URL | biomass-0.9.0-py3-none-any.whl |
|---|---|
| Size | 163.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
1f413e086ec3b89d6765b6150b3a8d052b6373dc974a2ffb2dffc714fd28693c
|
|
BLAKE2b-256 checksum How to use checksums |
133e91fc4bb26621e859fc1000f909ca104392b8e28b8298308efefaeb8c1729
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.10.5
|
