A feature detection LC-MS1 spectra.
Project description
biosaur2 - A feature detection LC-MS1 spectra. This project is a rewriten version of Biosaur software (https://github.com/abdrakhimov1/Biosaur).
The centroided mzML file is required for of the script.
Algorithm can be run with following command:
biosaur2 path_to_MZML
The script output contains tsv table with peptide features.
Citing biosaur2
Abdrakhimov, et al. Biosaur: An open-source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support. https://doi.org/10.1002/rcm.9045
Installation
Using the pip:
pip install biosaur2
Links
- GitHub repo & issue tracker: https://github.com/markmipt/biosaur2
- Mailing list: markmipt@gmail.com
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
biosaur2-0.1.1.tar.gz
(117.7 kB
view details)
File details
Details for the file biosaur2-0.1.1.tar.gz.
File metadata
- Download URL: biosaur2-0.1.1.tar.gz
- Upload date:
- Size: 117.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.5.0 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.10.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | f93066058e3292d461f2e379c5f43310a4f16df622460307804164ba59844ee3 |
|
| MD5 | 66e7880a8ff71d51fceca75dfd3e9e36 |
|
| BLAKE2b-256 | 557f57e24aec055c31d915caa484ac3396a0fba8326321c9116e0937ebdf70b3 |
