biosimulator-processes 0.0.3

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biosimulator-processes

Core implementations of process-bigraph.composite.Process() aligning with BioSimulators simulator tools.

Getting Started (PyPI)

The easiest way to download this tool is via the Python Package Index. You may download core-processes with:

pip install biosimulator-processes

We recommend using an environment/package manager like Conda to install the dependencies required for your use.

Most of the direct UI content for this tooling will be in the form of a jupyter notebook.

Using biosimulator_processes.smoldyn_process.SmoldynProcess():

PLEASE NOTE:

Due to the multi-lingual nature of Smoldyn, which is primarily developed in C++, the installation process for utilizing the SmoldynProcess process implementation requires separate handling. This is particularly relevant for macOS and Windows users, where setting up the Python bindings can be more complex.

Please follow the detailed installation instructions provided below to ensure proper setup of Smoldyn for your system.

To download Smoldyn, please follow these steps:

1. Visit the Smoldyn Download Page.
2. Choose the version appropriate for your operating system.
3. Follow the instructions or links provided on the page to complete the download.

For more detailed instructions and information, refer to the official Smoldyn documentation.

Quick Start Example:

TODO: Add quickstart example of instance declarations.

TODO: Add DatabaseEmitter to this README