biosniff 1.0.0

A sniffer for biological data formats

Python version:

3.7, 3.8, 3.9, 3.10

Issues:

On github

This tools is a simple Sniffer for Biological formats (and compression formats)

Installation

pip install biosniff

Usage

biosniff file.fasta
biosniff example.vcf
...

There are about 50 formats supported for now including:

abi, bam, bai, bcf, binary_bed, bed, bedgraph, bigwig, bigbed, bplink, bz2, cram, clustal, dsrc, embl,ena, fasta, fastq, genbank, gfa, gff2, gff3, gz, json, maf, newick, nexus, ods, paf, phylip, phyloxml, plink, qual, sam, scf, stockholm, rar, twobit, tsv, vcf, wiggle, wig, xls, xlsx, xmfa, yaml, zip, 7zip, xz

Changelog

Version	Description
1.0.0	add logo, add Python 3.10 in CI and tag to version 1.0
0.4.0	additional test and fix missing click requirements
0.3.0	add missing MANIFEST and applied black
0.2.0	more tests (80% coverage) and some simplifications
0.1.0	first commit