Skip to main content

A toolbox for biosignal processing written in Python.

Project description

BioSPPy - Biosignal Processing in Python

A toolbox for biosignal processing written in Python.

Image

The toolbox bundles together various signal processing and pattern recognition methods geared towards the analysis of biosignals.

Highlights:

  • Support for various biosignals: BVP, ECG, EDA, EEG, EMG, PPG, Respiration
  • Signal analysis primitives: filtering, frequency analysis
  • Clustering
  • Biometrics

Documentation can be found at: http://biosppy.readthedocs.org/

Installation

Installation can be easily done with pip:

$ pip install biosppy

Simple Example

The code below loads an ECG signal from the examples folder, filters it, performs R-peak detection, and computes the instantaneous heart rate.

from biosppy import storage
from biosppy.signals import ecg

# load raw ECG signal
signal, mdata = storage.load_txt('./examples/ecg.txt')

# process it and plot
out = ecg.ecg(signal=signal, sampling_rate=1000., show=True)

This should produce a plot similar to the one below.

Image

Dependencies

  • bidict
  • h5py
  • matplotlib
  • numpy
  • scikit-learn
  • scipy
  • shortuuid
  • six
  • joblib

Citing

Please use the following if you need to cite BioSPPy:

  • Carreiras C, Alves AP, Lourenço A, Canento F, Silva H, Fred A, et al. BioSPPy - Biosignal Processing in Python, 2015-, https://github.com/PIA-Group/BioSPPy/ [Online; accessed <year>-<month>-<day>].
@Misc{,
  author = {Carlos Carreiras and Ana Priscila Alves and Andr\'{e} Louren\c{c}o and Filipe Canento and Hugo Silva and Ana Fred and others},
  title = {{BioSPPy}: Biosignal Processing in {Python}},
  year = {2015--},
  url = "https://github.com/PIA-Group/BioSPPy/",
  note = {[Online; accessed <today>]}
}

License

BioSPPy is released under the BSD 3-clause license. See LICENSE for more details.

Disclaimer

This program is distributed in the hope it will be useful and provided to you "as is", but WITHOUT ANY WARRANTY, without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program is NOT intended for medical diagnosis. We expressly disclaim any liability whatsoever for any direct, indirect, consequential, incidental or special damages, including, without limitation, lost revenues, lost profits, losses resulting from business interruption or loss of data, regardless of the form of action or legal theory under which the liability may be asserted, even if advised of the possibility of such damages.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

biosppy-0.7.3.tar.gz (85.3 kB view hashes)

Uploaded Source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page