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Collection of bioinformatics tools related to alignments and phylogenetic trees

Project description

biotree_tools

Collection of bioinformatics tools related to alignments and phylogenetic trees

Installation

conda install -c mmariotti -c bioconda -c etetoolkit biotree_tools

Tools

  • alignment_tools utility to manipulate (reformat, subset, trim...) multiple sequence alignments
  • tree_tools utility to manipulate (rename, prune, set output...) trees in newick format
  • phylo_context given protein sequences, build and draw a tree to identify phylogenetic (sub)families
  • show_tree flexible tool to visualize an input protein tree in newick format

Run any tool with option -h to display its usage.

Project details


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