miscellaneous simple bioinformatics utilities and lookup tables
Project description
bioutils provides some common utilities and lookup tables for bioinformatics.
- bioutils.accessions – parse accessions, infer namespaces
- bioutils.assemblies – Human assembly information (from NCBI/GRCh)
- bioutils.cytobands – map cytobands to coordinates (from UCSC cytoband tables)
- bioutils.digests – implementations of various digests
- bioutils.normalize – allele normalization (left shuffle, right shuffle, expanded, vcf)
To use an E-Utilities API key run add it to an environment variable called ncbi_api_key and it will be used in the E-Utilities request.
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