miscellaneous simple bioinformatics utilities and lookup tables
Project description
bioutils provides some common utilities and lookup tables for bioinformatics.
bioutils.accessions – parse accessions, infer namespaces
bioutils.assemblies – Human assembly information (from NCBI/GRCh)
bioutils.cytobands – map cytobands to coordinates (from UCSC cytoband tables)
bioutils.digests – implementations of various digests
bioutils.normalize – allele normalization (left shuffle, right shuffle, expanded, vcf)
To use an E-Utilities API key run add it to an environment variable called ncbi_api_key and it will be used in the E-Utilities request.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bioutils-0.5.2.post2.tar.gz
(321.2 kB
view hashes)
Built Distribution
Close
Hashes for bioutils-0.5.2.post2-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 872922b5181ab684e3637054b47fb07e3d402e6abc4dfd413ff56d9b96d9bd29 |
|
MD5 | 71ab6961338d534050cdbfad360c5b22 |
|
BLAKE2b-256 | b3a4b44633ae603cc90889d6e2a1cdd94a0295c4717b1eb897c8bddaaa9660d7 |