Framework for differential microbiome abundance using Bayesian inference
Project description
BIRDMAn
Bayesian Inferential Regression for Differential Microbiome Analysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.
See the documentation for details on usage.
For an example of running BIRDMAn - see this Google Colab notebook.
Installation
Currently BIRDMAn requires Python 3.8 or higher.
We recommend using mamba for installation of dependencies.
mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman
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