miscellaneous BioInformatics ToolS
Project description
BITS: miscellaneous BioInformatics ToolS
Basically bioinformatics-related, reusable Python3 codes as a package.
Requirements
- Python packages listed in
setup.cfg
(automatically installed) - Seqkit (if you use
bits.seq.load_fast[a|q]
withrange=
option) - Edlib (if you use
bits.seq.EdlibRunner
) - Gepard (if you use
bits.seq.DotPlot
) - DAZZ_DB (if you use
bits.seq.load_db
etc)
How to install
$ git clone https://github.com/yoshihikosuzuki/bits
$ cd bits
$ pip install .
How to use
BITS has two submodules:
bits.seq
for DNA sequence manipulations, andbits.util
for other, general purposes in Python programming.
Import and use any function/class as follows:
import bits.seq as bs
print(bs.revcomp_seq('aactg'))
> cagtt
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