BITS: miscellaneous BioInformatics ToolS
Basically bioinformatics-related, reusable Python3 codes as a package.
How to install
git clone https://github.com/yoshihikosuzuki/bits
cd bits
pip install .
To run unit tests,
python -m unittest
Optional requirements
If you use bits.seq.load_fast[a|q] with range= option,
If you use bits.seq.DotPlot,
- Gepard, or
- modified Gepard (recommended)
If you use bits.seq.load_db etc.,
How to use
BITS has two submodules:
bits.seqfor DNA sequence manipulations, andbits.utilfor other, general purposes in Python programming.
Import and use any function/class as follows:
import bits.seq as bs
print(bs.revcomp_seq('aactg'))
> cagtt
1 maintainer
Metadata
1 maintainer
Release files for bits-yoshi 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| bits_yoshi-0.2.1.tar.gz | 27.7 kB | Without provenance | Details for bits_yoshi-0.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bits_yoshi-0.2.1-py3-none-any.whl | Python 3 | none | any | Details for bits_yoshi-0.2.1-py3-none-any.whl |
Total release size: 61.4 kB
Release files / bits_yoshi-0.2.1.tar.gz
| Download URL | bits_yoshi-0.2.1.tar.gz |
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| Size | 27.7 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / bits_yoshi-0.2.1-py3-none-any.whl
| Download URL | bits_yoshi-0.2.1-py3-none-any.whl |
|---|---|
| Size | 33.7 kB |
| Tags | Python 3 |
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