BMTools
Project description
bmtools
A collection of scripts to make developing networks in BMTK easier.
Getting Started
Installation
git clone https://github.com/tjbanks/bmtools
cd bmtools
python setup.py install
For developers who will be pulling down additional updates to this repository regularly use the following instead.
python setup.py develop
Example Use
> cd your_bmtk_model_directory
> bmtools
Usage: bmtools [OPTIONS] COMMAND [ARGS]...
Options:
--verbose Verbose printing
--help Show this message and exit.
Commands:
debug
plot
util
>
> bmtools plot
Usage: bmtools plot [OPTIONS] COMMAND [ARGS]...
Options:
--config PATH Configuration file to use, default: "simulation_config.json"
--no-display When set there will be no plot displayed, useful for saving
plots
--help Show this message and exit.
Commands:
connection Display information related to neuron connections
positions Plot cell positions for a given set of populations
raster Plot the spike raster for a given population
report Plot the specified report using BMTK's default report plotter
>
> bmtools plot positions
Planned future features
bmtools build
Create a starting point network
Download sample networks
bmtools plot
Plot variable traces
Plot spike rasters
Plot cell positions
Plot connection matricies
bmtools debug
list cell types available for single debug
Run a single cell in the network
Isolate a single cell in the network
Project details
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