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Bohra

Bohra Logo

Bohra is an extensive pipeline for taking genome sequences (short reads or assemblies) and running common bioinformatics assays across the, including genotyping, AMR detection, and phylogenetics.

Bohra is a modern replacement for the Nullarbor pipeline. It is written in Python and Nextflow instead of Perl and Make.

Installation

  1. Install the base packaghe
% conda create -n bohra -c bioconda bohra
% borha --version
  1. Install all the analysis modules. This can take a long time (10-60 min) but it's worth it!
% bohra deps install
  1. Test everthing worked ok
% bohra test --cpus 8

Documentation

Read the Bohra website to learn how to use all the availaile features.

Workflow

Bohra workflow

Authors

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for kristyhoran from gravatar.com kristyhoran

Credits

Author: Kristy Horan

License expression

GPL-3.0-or-later
View SPDX License List

Requires

Python >=3.11

Provides Extra

tests

Tags

bioinformatics microbiology public health

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for kristyhoran from gravatar.com kristyhoran

Credits

Author: Kristy Horan

License expression

GPL-3.0-or-later
View SPDX License List

Requires

Python >=3.11

Provides Extra

tests

Tags

bioinformatics microbiology public health

Classifiers

Report project as malware

Release files for bohra 3.8.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for bohra 3.8.1
File Size Uploaded
bohra-3.8.1.tar.gz 2.6 MB Details

Built distribution (wheel)

Table of built distributions (wheels) for bohra 3.8.1
File Interpreter ABI Platform
bohra-3.8.1-py3-none-any.whl 2.8 MB Python 3 none any Details

Total release size: 5.4 MB

Release files / bohra-3.8.1.tar.gz

Download URL bohra-3.8.1.tar.gz
Size 2.6 MB
Tags Source
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Release files / bohra-3.8.1-py3-none-any.whl

Download URL bohra-3.8.1-py3-none-any.whl
Size 2.8 MB
Tags Python 3
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