boink 0.0.0

boink: streaming de Bruijn graph compaction and sketching.

boink

Installation

For this repository with anaconda:

git clone https://github.com/camillescott/boink && cd boink
git submodule update --init --recursive

conda create -y -n libboink -c conda-forge python=3 cmake cxx-compiler c-compiler clangdev libcxx libstdcxx-ng libgcc-ng pytest numpy scipy openmp python-clang screed blessings pytest-benchmark pyfiglet py-cpuinfo
conda activate libboink
pip install -r requirements.txt

mkdir build; cd build
cmake ..
make
make install