booleabayes 0.1.2

A suite for network inference from transcriptomics data

BooleaBayes is a suite of network inference tools to derive and simulate gene regulatory networks from transcriptomics data. To see how BooleaBayes could be applied to your own data, see our publication in PLOS Computational Biology, Wooten, Groves et al. (2019).

Installation

To install BooleaBayes, please use:

pip install booleabayes

Dependencies

The graph-tool python package will need to be installed. This can be installed with Conda, homebrew, etc as seen here. All other dependencies will be installed with this package.

BooleaBayes Usage:

• net = make or modify network structure

• load = loading data

• proc = processing

• rw = random walk

• plot = plotting

• tl = tools

• utils = utilities