Species specific scripts for ecoli
Project description
bps_fbi_sp_ecoli
Install
pip install bps_fbi_sp_ecoli
How to use
Determines the serotype and virulence in ecoli through kmer alignment
! FBI_run_bifrostecolipostkma -h
#! FBI_run_bifrostecolipostkma --input input/231116_CUSTOM_SSIFBI_ECOLI --sample_sheet sample_sheet.xlsx --output output/231116_CUSTOM_SSIFBI_ECOLI --command_file output/231116_CUSTOM_SSIFBI_ECOLI/run_bifrostecolipostkma.tsv --execute
! FBI_run_qcecolisummary -h
#! FBI_run_bifrostecolipostkma --input input/231116_CUSTOM_SSIFBI_ECOLI --sample_sheet sample_sheet.xlsx --output output/231116_CUSTOM_SSIFBI_ECOLI --command_file output/231116_CUSTOM_SSIFBI_ECOLI/run_bifrostecolipostkma.tsv --execute
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bps_fbi_sp_ecoli-0.0.2.tar.gz
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