:mod:brainpy is a small Python library implementing the B afflingly R ecursive
A lgorithm for I sotopic Patter N generation [Dittwald2014]_. It includes three implementations,
a pure-Python object oriented implementation, a :title-reference:Cython accelerated
version of the object oriented implementation, and a pure :title-reference:C implementation,
listed in order of ascending speed. The C implementation is used by default when available.
BRAIN, implemented in :func:brainpy.isotopic_variants, takes an elemental
composition represented by any :class:~.collections.abc.Mapping-like Python object and uses
it to compute its aggregated isotopic distribution. All isotopic variants of the same number
of neutrons are collapsed into a single centroid peak, meaning it does not consider isotopic
fine structure.
Installing
:mod:brainpy has three implementations, a pure Python implementation, a Cython translation
of that implementation, and a pure C implementation that releases the :title-reference:GIL.
To install from a package index, you will need to have a C compiler appropriate to your Python
version to build these extension modules. Additionally, there are prebuilt wheels for Windows
available on PyPI <https://pypi.org/project/brain-isotopic-distribution/>_:
.. code-block:: sh
$ pip install brain-isotopic-distribution
To build from source, in addition to a C compiler you will also need to install a recent version
of Cython <https://pypi.org/project/Cython/>_ to transpile C code.
References
This package is an implementation of the algorithm originally described in P. Dittwald, J. Claesen, T. Burzykowski, D. Valkenborg, and A. Gambin, "BRAIN: a universal tool for high-throughput calculations of the isotopic distribution for mass spectrometry.", Anal. Chem., vol. 85, no. 4, pp. 1991–4, Feb. 2013.
H. Hu, P. Dittwald, J. Zaia, and D. Valkenborg,
"Comment on 'Computation of isotopic peak center-mass distribution by fourier transform'.",
Anal. Chem., vol. 85, no. 24, pp. 12189–92, Dec. 2013.
1 maintainer
Release files for brain-isotopic-distribution 1.5.19
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| brain_isotopic_distribution-1.5.19.tar.gz | 591.8 kB | Details |
Built distributions (wheels)
Total release size: 20.1 MB
Release files / brain_isotopic_distribution-1.5.19.tar.gz
| Download URL | brain_isotopic_distribution-1.5.19.tar.gz |
|---|---|
| Size | 591.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
cad44fcb1ddbd26787dafb65345558df5119a7928b6e773fbb9dd5fd4f3334de
|
|
BLAKE2b-256 checksum How to use checksums |
402dc5de0f5eeb0745192ffc731e78397825c490d4e999bed2bb4e29b57e0ebd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp312-cp312-win_amd64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp312-cp312-win_amd64.whl |
|---|---|
| Size | 844.6 kB |
| Tags | CPython 3.12 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
5bca2d1dd1e7bdbe760456583cf158444686566f30025630fc685308af57cea6
|
|
BLAKE2b-256 checksum How to use checksums |
ec4e402b9fc1a958767b7390046ce3f72f876eddbc3fade1681b4baa29f1fb98
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.12 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
0651e9490880c5d699f573277705b2ef0972d32a2b752ec3e49b768a7f75b597
|
|
BLAKE2b-256 checksum How to use checksums |
6423e80f8e519fcdea4bdf483c6363db5629a10fd6be8e179bb47bdc07707bec
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp312-cp312-macosx_11_0_arm64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp312-cp312-macosx_11_0_arm64.whl |
|---|---|
| Size | 852.0 kB |
| Tags | CPython 3.12 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
7e59fe63c4a57f2db17b65d5aab98ae470ae7adeaef6a8c6c7dc52116b9d7925
|
|
BLAKE2b-256 checksum How to use checksums |
ca3feb6adbe67e877d4fc6792cf51473f19c1522ba019a46c56f7a68b2dc4fbc
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp311-cp311-win_amd64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp311-cp311-win_amd64.whl |
|---|---|
| Size | 843.6 kB |
| Tags | CPython 3.11 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
42b19145326fc15362a9ce943d69448b766b4c1f6cf046fa84cb40d428d9c698
|
|
BLAKE2b-256 checksum How to use checksums |
e2da9f63a844dff3c38b315964828edc5e8a9f97f02d1f57b8cc4014f6a53e8f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.3 MB |
| Tags | CPython 3.11 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
9f4b9f6ac714e958ebf263276a484a8368778e3e1ade8fdf4a87e0576e1384cf
|
|
BLAKE2b-256 checksum How to use checksums |
d1059106e918f5db7a7c0e01922c2e31bb430f80721decc6e252d7cd46279d7f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp311-cp311-macosx_11_0_arm64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp311-cp311-macosx_11_0_arm64.whl |
|---|---|
| Size | 853.5 kB |
| Tags | CPython 3.11 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
417faed1d00ed8a973241f992895d728ede46bd8778e4bce7398fdb6b9467f5b
|
|
BLAKE2b-256 checksum How to use checksums |
86288323a24560d2ddac17fe356c4eefc545eeae66f93dd12a552d9f7aa15593
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp310-cp310-win_amd64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp310-cp310-win_amd64.whl |
|---|---|
| Size | 842.3 kB |
| Tags | CPython 3.10 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
855c040f3ee967202e0c55c88c2bfca0050c7ca7b99c5001487be68155eac8c8
|
|
BLAKE2b-256 checksum How to use checksums |
3a35f14869ff6a4c3386c47686d478b01f0db218ba24c1333f8bac63c1773cea
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
dd6675cdc9d4d815df8b1571c209d35dccb02fc95492e55ca3ab49825073dfdb
|
|
BLAKE2b-256 checksum How to use checksums |
d4988f081bcc49565f8a803cfae3226ed12b3500f65c54a2029c8497131cc6f8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp310-cp310-macosx_11_0_arm64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp310-cp310-macosx_11_0_arm64.whl |
|---|---|
| Size | 850.2 kB |
| Tags | CPython 3.10 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
9cb8a5009177eacb43c8323f88ecd0b58385db4293a38593ccfb6caf52fe2e56
|
|
BLAKE2b-256 checksum How to use checksums |
59bb4074978a2d98055958b4927d31da85b5097b0c87ff33fe5245c05c0a4f6c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp39-cp39-win_amd64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp39-cp39-win_amd64.whl |
|---|---|
| Size | 843.7 kB |
| Tags | CPython 3.9 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
a4bc7da61d21a8d3e7a5769665b1edbf4e20c7ed3a7da604d26c478e4296309a
|
|
BLAKE2b-256 checksum How to use checksums |
52d5b46f1286e09a3bea678d5b1701b5ca7909db67015d2cdc196075e974f4c9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
bb622c81e8d5633bf334fe151bba54abf76889251ccb19e43660d5c3db3544af
|
|
BLAKE2b-256 checksum How to use checksums |
a595c0721b370992c9fbff2c3cba6f416f4873ae6b6f116e58417ffcf6c2eefb
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp39-cp39-macosx_11_0_arm64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp39-cp39-macosx_11_0_arm64.whl |
|---|---|
| Size | 852.0 kB |
| Tags | CPython 3.9 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
fa751b98ef59981308d42ea40102dc8c3cddad038b7c93b791adbceddb9f081e
|
|
BLAKE2b-256 checksum How to use checksums |
af712a47e84eaa9a58dd8054299e575e03357eda5bc4a580ff57e3f0026be4ea
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp38-cp38-win_amd64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp38-cp38-win_amd64.whl |
|---|---|
| Size | 845.9 kB |
| Tags | CPython 3.8 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
6005068203fda8438724d20c01cb1b717095211939f56ea1bac09753106ff1a9
|
|
BLAKE2b-256 checksum How to use checksums |
deb2a6e3a2cf98fbf240c2aceb5513f6f27a13c90ffdc7ced2d860462112a8ae
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.2 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
13926c14efcc7eb13d7d8a61d30985f7eaa866b8d58dc847da724d48d560ca60
|
|
BLAKE2b-256 checksum How to use checksums |
f7e85109fe9247d65f86c64b183a250ec73a40c3d8e574590f0c3192a3e1e1e8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
Release files / brain_isotopic_distribution-1.5.19-cp38-cp38-macosx_11_0_arm64.whl
| Download URL | brain_isotopic_distribution-1.5.19-cp38-cp38-macosx_11_0_arm64.whl |
|---|---|
| Size | 856.4 kB |
| Tags | CPython 3.8 macOS 11.0+ ARM64 |
|
SHA-256 checksum How to use checksums |
c894611c3756226ca7bc962fbca8154dbe430501ed8c191d995ddb7d2d935994
|
|
BLAKE2b-256 checksum How to use checksums |
0b2a013cfb6d1639473ca2dc58a408d4c66f73094ad2ad57e9a284b092e96e2d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.22
|
