Script for visualizing ICA/ROI brain parcellation
Project description
brainbow
Script for visualizing ICA/ROI brain parcellation
Requirements
pip install brainbow
Examples
brainbow --nifti nifti.nii --anat anat.nii
Options for brainbow
-
--nifti
- path to the 4D nifti to convert to images
- required
-
--anat
- path to the anatomical image to use as underlay
- required
-
--output
- Name of the output file(s)
- default - brainbow-output.png/svg
- You can specify the exact extension (png or svg). If none is provided, both extensions will be used.
-
--dir
- name for the directory where to save results
- can be nested (e.g.,
final/most_final
) - default - directory where brainbow is executed
-
--sign
- choices:
pos, neg, both
- used for filtering only positive, only negative, or both components
- default -
both
- choices:
-
--thr
- threshold value for component significance
- default -
2.0
-
--dpi
- dpi for png output
- default -
300
Project details
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