Segmentation of anatomical structures in a common coordinate space
Project description
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
Installation
PyPI
pip install brainglobe-segmentation
conda
conda install -c conda-forge brainglobe-segmentation
N.B. Your data will need to be registered to an anatomical atlas first.
Usage
See user guide.
If you have any questions, head over to the image.sc forum.
Contributing
Contributions are very welcome. Please see the developers guide.
Citing brainglobe-segmentation
If you find brainglobe-segmentation useful, and use it in your research, please let us know and also cite the paper:
Tyson, A. L., Vélez-Fort, M., Rousseau, C. V., Cossell, L., Tsitoura, C., Lenzi, S. C., Obenhaus, H. A., Claudi, F., Branco, T., Margrie, T. W. (2022). Accurate determination of marker location within whole-brain microscopy images. Scientific Reports, 12, 867 doi.org/10.1038/s41598-021-04676-9
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