Manual segmentation of 3D brain structures in a common anatomical space
Project description
brainreg-segment
Segmentation of 1/2/3D brain structures in a common anatomical space
brainreg-segment
is a companion to brainreg
allowing manual segmentation of regions/objects within the brain (e.g. injection sites, probes etc.) allowing for automated analysis of brain region distribution, and visualisation (e.g. in brainrender).
Installation
brainreg-segment comes bundled with brainreg
, so see the brainreg installation instructions.
brainreg-segment can be installed on it's own (pip install brainreg-segment
), but you will need to register your data with brainreg first.
Usage
See user guide
Project details
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