Manual segmentation of 3D brain structures in a common anatomical space

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brainreg-segment

Segmentation of 1/2/3D brain structures in a common anatomical space

brainreg-segment is a companion to brainreg allowing manual segmentation of regions/objects within the brain (e.g. injection sites, probes etc.) allowing for automated analysis of brain region distribution, and visualisation (e.g. in brainrender).

Installation

brainreg-segment comes bundled with brainreg, so see the brainreg installation instructions.

brainreg-segment can be installed on it's own (pip install brainreg-segment), but you will need to register your data with brainreg first.

Usage

See user guide

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0.2.20

0.2.19

0.2.18

0.2.17

0.2.17rc3 pre-release

0.2.17rc2 pre-release

0.2.17rc0 pre-release

0.2.16

0.2.16rc0 pre-release

0.2.15rc0 pre-release

0.2.14

0.2.14rc0 pre-release

0.2.13

0.2.13rc0 pre-release

0.2.12

0.2.11

0.2.8

0.2.8rc0 pre-release

0.2.7

0.2.7rc0 pre-release

0.2.6

0.2.6rc0 pre-release

This version

0.2.5

0.2.4

0.2.3

0.2.2

0.2.2rc0 pre-release

0.2.1

0.1.3

0.1.2

0.1.1

0.1.0

0.0.4

0.0.2

0.0.1

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