Skip to main content

Manual segmentation of 3D brain structures in a common anatomical space

Project description

Python Version PyPI Wheel Development Status Tests Coverage Status Code style: black Gitter

brainreg-segment

Segmentation of 1/2/3D brain structures in a common anatomical space

brainreg-segment is a companion to brainreg allowing manual segmentation of regions/objects within the brain (e.g. injection sites, probes etc.) allowing for automated analysis of brain region distribution, and visualisation (e.g. in brainrender).

Installation

brainreg-segment comes bundled with brainreg, so see the brainreg installation instructions.

brainreg-segment can be installed on it's own (pip install brainreg-segment), but you will need to register your data with brainreg first.

Usage

See user guide

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

brainreg-segment-0.2.5.tar.gz (20.4 kB view hashes)

Uploaded Source

Built Distribution

brainreg_segment-0.2.5-py3-none-any.whl (141.7 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page