brplotviz 0.3.2

Utilities for nicely formatted tables and plots

brplotviz – utilities for nicely formatted tables and plots

Installation and Building documentation

Install this package via pip install -U brplotviz. To build the documentation, download the source code and unpack it. Then, run doxygen in brplotviz's root directory (this one). How to install doxygen, see on their website (doxygen.nl). The documentation will be assing it to the directory ./Documentation

Getting started

brplotviz consists of two packages, table and plot.

Table

brplotviz.plot.table provides functions to format and output tabular data. This tabular data is expected to be a sequence of sequences (list of lists ect.). When a row (or column) is shorter than the others the missing cells are added as empty ones. Multi-line cells (containing newline characters) are supported, additional lines are inserted in the output plain text table a required.

Styles

brplotviz.table comes with a few table styles. To showcase the different styles, the script is used, where only the <style> is replaced with the following options.

Some finer, advanced tuning of the style can be done with the style_kwargs dictionary. For example, padding of the cells on the left or right side is possible.

table_data = [
	["a",123.456, 12],
	["bc\nde", 23.34, 345],
	["and f", 45.],
	]

table.print_table(
	table=table_data,
	style=<style>,
	)

"csv" is a simple character-separated value style. The separator character is configurable, but defaults to the comma (",").

a    ,123.456,12 
bc   ,23.34  ,345
de   ,       ,   
and f,45.0   ,   

"tsv" is a special case of csv with tab ("\t") as separator charater.

a    	123.456	12 
bc   	23.34  	345
de   	       	   
and f	45.0   	   

"latex" A table using the LaTeX markup with booktabs rules. This only sets the content that goes into the body of a tabular environment.

\toprule
a    &123.456&12 \\
\midrule
bc   &23.34  &345\\
de   &       &   \\
and f&45.0   &   \\
\bottomrule

A complete LaTeX environment is output the wrapper function brplotviz.table.print_table_LaTeX(). This function accepts the same (and some more) arguments than brplotviz.table.print_table()

brplotviz.table.print_table_LaTeX(
	table=table,
	caption="This is the caption",
	LaTeX_label="example",
	)

The result is the following LaTeX code. Note, that brplotviz will try to fill in the column alignment based on align. TO overwrite the default, use the argument LaTeX_format. LaTeX_format works analougously to align.

\begin{table}[!htbp]
\centering
\caption{This is the caption}
\label{tab:example}
\begin{tabular}{@{}
*{3}{l}
@{}}
\toprule
a    &123.456&12 \\
\midrule
bc   &23.34  &345\\
de   &       &   \\
and f&45.0   &   \\
\bottomrule
\end{tabular}
\end{table}

"markdown"`outputs a Markdown table.

|a    |123.456|12  |
|:----|:------|:---|
|bc   |23.34  |345 |
|de   |       |    |
|and f|45.0   |    |

"test" is for testing purposes.

---TopRule---
^> a     <||> 123.456 <|> 12  <$
---HeadRule---
^> bc    <||> 23.34   <|> 345 <$
---NoRule---
^> de    <||>         <|>     <$
---MidRule---
^> and f <||> 45.0    <|>     <$
---BotRule---

Custom styles are possible by sub-classing brplotviz.tables.styles.Style.

Headers

brplotviz.table provides the option to add headers, to both columns and rows. The example_table, that we plotted could be only the body of the table.

head_row = ["Col 1", "Col 2", "Col 3"]
head_col = ["Row 1", "Row 2", "Row 3"]
top_left = "Top left"
align = ["l", "c", "r", "r"]

table.print_table(
	table=table_data,
	style="markdown",
	head_col=head_col,
	head_row=head_row,
	top_left=top_left,
	)

Note, that both the header row head_row and header column head_col can be set independently of each other.

|Top left|Col 1|Col 2  |Col 3|
|:-------|:----|:------|:----|
|Row 1   |a    |123.456|12   |
|Row 2   |bc   |23.34  |345  |
|        |de   |       |     |
|Row 3   |and f|45.0   |     |

Table rows are numbered automatically when setting head_col="enumerate". The numbering starts after the header row. Note, that rows with multiline cells are taken into account.

|Top left|Col 1|Col 2  |Col 3|
|:-------|:----|:------|:----|
|1       |a    |123.456|12   |
|2       |bc   |23.34  |345  |
|        |de   |       |     |
|3       |and f|45.0   |     |

Formatting

The formatting of the table's cells can be set table-global, column-wise or for each cell individually. If the formatter is a string, this formatter is applied to all cells of the table. If the formatter is a list of strings, the formatting is applied column-wise (without the head_col). If the formatter is a list of list strings, the formatting is applied for each cell individually. The formatter is expected in the Format Specification Mini-Language. Here, it is shown for a column-wise formatting:

table.print_table(
	table=table_data,
	style="markdown",
	formatter=["", ":.2f", ":.1f"],
	)

|Top left|Col 1|Col 2 |Col 3|
|:-------|:----|:-----|:----|
|1       |a    |123.46|12.0 |
|2       |bc   |23.34 |345.0|
|        |de   |      |     |
|3       |and f|45.00 |     |

Alignment

Columns are alined by adding whitespace to make all cells in a column to the same width. By default, all cells are printed left-aligned. Similar to the formatting, the alignment can be set for all columns or for each column separately. Alignment can be turned off by setting align=None.

table.print_table(
	table=table_data,
	style="markdown",
	align=["l", "c", "r", "r"],
	)

|Top left|Col 1| Col 2 |Col 3|
|:-------|:---:|------:|----:|
|1       |  a  |123.456|   12|
|2       | bc  |  23.34|  345|
|        | de  |       |     |
|3       |and f|   45.0|     |

Rules

The horizontal lines in the table ar ecalled rules. To add an extra rule include a brplotviz.table.rules.ExtraRule in the table. Note, that not all styles support ExtraLines. The rule separating the header column from the body can be suppressed by omit_head_rule=True.

Additional options for table output

To transpose the table (switch columns with rows), use transpose=True. Note, that this will not switch head_col and head_row.

With replacement, a dictionary can be passed to replace cell content. If a cell's content is found in the replacement`'s keys, the content is replaced with the associated value. Note, that the replacement takes place after formatting.

By default brplotviz.table.print_table(), prints the typeset table and returns nothing (None). To return the lines, set return_lines=True. Set show=False to turn off the printing.

Plot

brplotviz.plot provides functions to simplify the output of nicely formatted graphs. The focus is on a graphical style suited for printing. Thus, a monochrome (black-white) style is used.

Let's start plotting. First, we need some data:

import numpy as np
import brplotviz
x_list = np.linspace(0, 2, 17)
y_list_sin = np.sin(x_list)
y_list_cos = np.cos(x_list)
x_table = [x_list, x_list]
y_table = [y_list_sin, y_list_cos]
record_names = ["sine", "cosine"]

Plotting a single line-graph and a scatter plot is as simple as: Each one is shown on separately.

brplotviz.plot.single_line(x_list, y_list_sin)
brplotviz.plot.single_scatter(x_list, y_list_sin)

Plotting several line plots or mutliple scatter plots is:

brplotviz.plot.multi_line(x_table, y_table, record_names)
brplotviz.plot.multi_scatter(x_table, y_table, record_names)

To mix line and scatter plot we need to construct a list of data record tuples first:

record_list = [(x_list, y_list_sin, "scatter", {"label": "sine"}), (x_list, y_list_cos, "line", {"label": "cosine"})]
brplotviz.plot.mixed_graphs(record_list)

Finally, let's plot a bar chart first with one data record, then with multiple records:

brplotviz.plot.bar_categories([y_list_sin], category_names=x_list)
brplotviz.plot.bar_categories(y_table, category_names=x_list)

Output

By default, plots are shown on screen and tables are printed to the standard output. Plots and tables can be written to disk with the keyword argument file=<file path here>. If file is set, the nothing shown (neither plots or tables), unless show=True is set explicitely.

Warning: the file is overwritten without further questions.

Licence and Copyright

Author: Bertram Richter
Copyright: Copyright by the author, 2024.
License: This software is released under GPLv3, see LICENSE for details

Dependencies

• Python >=3.? (Developed under Python 3.9)
• matplotlib >=3.5.0 for plotting and drawing graphs. See matplotlib.org for the documentation.
• numpy for array operations. See numpy.org for the documentation.