Bisulfite Sequencing Processing Platform

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Project description

BSBolt (BiSulfite Bolt)

A fast and safe read alignment platform for bisulfite sequencing data

BiSuflite Bolt (BSBolt); a fast and scalable bisulfite sequencing analysis platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated to work with a wide array of bisulfite sequencing data, including whole genome bisulfite sequencing (WGBS), reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data.

Documentation

BSBolt documentation can be found at bsbolt.readthedocs.io.

Installation

At installation two external dependencies Bowtie2 and ART Read Simulation Tools are compiled under the terms of the GPLv3 License. Installation failures are generally due to external C libraries not being installed or not being on path.

pip3 install BSBolt -v
  1. Python Dependencies
  2. External C Dependencies
    • libgsl
    • zlib
    • libbz2
    • liblzma
    • libcurl
    • libcrypto

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1.6.0

1.5.0

1.4.8

1.4.7

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1.4.5

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1.3.6

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1.1.2

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0.3.0

This version

0.1.2

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