Bisulfite Sequencing Processing Platform
Project description
BSBolt (BiSulfite Bolt)
A fast and safe bisulfite sequencing processing platform
BiSuflite Bolt (BSBolt); a fast and scalable bisulfite sequencing processing platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated to work with a wide array of bisulfite sequencing data,including whole genome bisulfite sequencing (WGBS), reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data. BSBolt utilizes forked versions of BWA and WGSIM for read alignment and read simulation respectively. BSBolt is released under the MIT license.
Documentation
BSBolt documentation can be found at bsbolt.readthedocs.io.
Installation
BSBolt alignment is performed using a modified version of BWA. Read simulation is carried out using a modified version of wgsim.
Install through PyPi
pip3 install BSBolt -v
Install from source
git clone git@github.com:NuttyLogic/BSBolt.git
cd BSBolt-master
python3 setup.py install .
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distributions
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file BSBolt-1.1.2.tar.gz.
File metadata
- Download URL: BSBolt-1.1.2.tar.gz
- Upload date:
- Size: 175.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
50c797d707aecf25f21cf23dbd6c0adaedc4e9505da087e61f9e26230f51a09d
|
|
| MD5 |
dc5656ce0139cade116e4a794f2ab909
|
|
| BLAKE2b-256 |
addd70bb1751f7240611052fa53bc4f2b78bb8943678d9f3ea5737538cca77b0
|
File details
Details for the file BSBolt-1.1.2-cp38-cp38-manylinux2010_x86_64.whl.
File metadata
- Download URL: BSBolt-1.1.2-cp38-cp38-manylinux2010_x86_64.whl
- Upload date:
- Size: 568.3 kB
- Tags: CPython 3.8, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
cde494fcf45c91e22c3b37ea9d5e5186722b905691e9b20d9d3f1cc8b73fde7c
|
|
| MD5 |
ab816e014d5f15010f8ecccda65a2b1c
|
|
| BLAKE2b-256 |
ca2e2d3e5647a725e6d5d8c11070c0d3952ef62298bd74a15faf90fbe0dc2f99
|
File details
Details for the file BSBolt-1.1.2-cp37-cp37m-manylinux2010_x86_64.whl.
File metadata
- Download URL: BSBolt-1.1.2-cp37-cp37m-manylinux2010_x86_64.whl
- Upload date:
- Size: 568.3 kB
- Tags: CPython 3.7m, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6ec58f2227077cb0ae3fb0d40ca17a5c22c3741e7aabd7c826677eb9d51e6e43
|
|
| MD5 |
d8d1e87b32d9e384c7ce3bfb843702c8
|
|
| BLAKE2b-256 |
9a962a9c88667cddf7c20b7e2732968fa757270bce8883d3106ef9ed98934724
|
File details
Details for the file BSBolt-1.1.2-cp36-cp36m-manylinux2010_x86_64.whl.
File metadata
- Download URL: BSBolt-1.1.2-cp36-cp36m-manylinux2010_x86_64.whl
- Upload date:
- Size: 568.3 kB
- Tags: CPython 3.6m, manylinux: glibc 2.12+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
8e95a7e206eb38b444ef693993a1aaeb35011e6e49e171856d63306385b042f9
|
|
| MD5 |
f3d1cd67c16ad13613dff4cb50034353
|
|
| BLAKE2b-256 |
98a0fac7e567194ee6bb597c300146f8d96dd1d0b503f881f9a6822a0a2d5132
|
