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Build clade HMMs from a multiple sequence alignment file

Project description

build_subpfam

Build per-clade pHMM models from a collection of aligned protein sequences (in a multifasta format).

Clades are programmatically defined by cutting a mid-rooted, laderized, and ultrametricized phylogenetic tree of the aligned sequences by a specified length point.

subpfam

Usage under construction

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