Skip to main content

Build clade HMMs from a multiple sequence alignment file

Project description


Build per-clade pHMM models from a collection of aligned protein sequences (in a multifasta format).

Clades are programmatically defined by cutting a mid-rooted, laderized, and ultrametricized phylogenetic tree of the aligned sequences by a specified length point.


Usage under construction

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

build_subpfam-0.1.1.tar.gz (4.2 kB view hashes)

Uploaded source

Built Distribution

build_subpfam-0.1.1-py3-none-any.whl (18.5 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page