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A library that uses Bayesian inference to identify gene-level and isoform-level ASE

Project description

BYASE

A library that uses Bayesian inference to identify gene-level and isoform-level ASE (Allele-specific expression) in polyploid (diploid or higher) organisms from single-end or paired-end RNA-seq data.

Installation

BYASE is released as a Python package and can be installed by:

pip3 install --user byase

BYASE will automatically install some package dependencies, such as numpy, scipy, pandas, pymc3, htseq and pyarrow. In order to avoid possible installation problems on the server or cluster system, BYASE does not automatically install the package matplotlib. To use the plotting module, matplotlib should be installed manually on the computer:

pip3 install --user matplotlib

Documentation

The documentation of BYASE can be found here.

Project details


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