A library that uses Bayesian inference to identify gene-level and isoform-level ASE
Project description
BYASE
A library that uses Bayesian inference to identify gene-level and isoform-level ASE (Allele-specific expression) in polyploid (diploid or higher) organisms from single-end or paired-end RNA-seq data.
Installation
BYASE is released as a Python package and can be installed by:
pip3 install --user byase
BYASE will automatically install some package dependencies,
such as numpy, scipy, pandas, pymc3, htseq and
pyarrow. In order to avoid possible installation problems
on the server or cluster system, BYASE does not automatically
install the package matplotlib.
To use the plotting module, matplotlib should be
installed manually on the computer:
pip3 install --user matplotlib
Documentation
The documentation of BYASE can be found here.
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