Skip to main content

A Flask + ReactJS boilerplate

Project description

<div align="center">
<img src=".github/logo-w-title.png" width="256">


<h4 align="center">
A data mining suite for DNA microarrays

<p align="center">
<a href="">
<img src=""/>
<a href="">
<img src="!-1EAEDB.svg?style=flat-square">
<a href="">
<img src="">

<div align="center">
<img src=".github/sample.gif" height="512">

**candis** is an open source data mining suite (released under the [GNU General Public License v3](LICENSE)) for DNA microarrays that consists of a wide collection of tools you require, right from Data Extraction to Model Deployment. **candis** is built on top of the toolkit - [CancerDiscover]( written by the bioinformaticians at [HelikarLab](

***WARNING***: candis currently is still in `dev` mode and not production-ready yet. In case if you run across bugs or errors, raise an issue over [here](

### Table of Contents
* [Installation](#installation)
* [Usage](#usage)
* [Features](#features)
* [Dependencies](#dependencies)
* [License](#license)

### Installation

#### TL;DR

$ curl -sL | python

To install candis right from scratch, check out our exhaustive guides:
* [A Hitchhiker's Guide to Installing candis on Mac OS X]('s-Guide-to-Installing-candis-on-Mac-OS-X)
* [A Hitchhiker's Guide to Installing candis on Linux OS]('s-Guide-to-Installing-candis-on-Linux-OS) (In Progress)
* [A Hitchhiker's Guide to Installing candis on Windows OS]('s-Guide-to-Installing-candis-on-Windows-OS) (Contributors Wanted)

### Usage
**Launching the RIA (Rich Internet Application)**

via CLI
$ candis
$ python -m candis

via Python
>>> import candis
>>> candis.main()

**Using the CLI (Command Line Interface)**

$ candis --cdata path/to/data.cdata --config path/to/config.json

### Features
* Converting a CDATA to an **ARFF** file

>>> import candis
>>> cdata ='path/to/data.cdata')

Then, simply use the `CData.toARFF` API:

>>> cdata.toARFF('path/to/data.arff')

* Running a `Pipeline`.
>>> pipe = candis.Pipeline()
>>> while pipe.status == candis.Pipeline.RUNNING:
... # do something while pipeline is running

### Dependencies
* Production Dependencies
* R
* WEKA (***NOTE:*** Requires Java)
* Python 3.6+ and [PIP]( (Python's Package Manager)
* Development Dependencies
* [Node.js](
* [SASS](

### License
This software has been released under the [GNU General Public License v3](LICENSE).

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for candis, version 0.0.1
Filename, size File type Python version Upload date Hashes
Filename, size candis-0.0.1-py2.py3-none-any.whl (2.1 MB) File type Wheel Python version py2.py3 Upload date Hashes View
Filename, size candis-0.0.1.tar.gz (2.0 MB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page