cane 2.0.0.1

Cane - Categorical Attribute traNsformation Environment

Cane - Categorical Attribute traNsformation Environment

CANE is a simpler but powerful preprocessing method for machine learning.

At the moment offers 3 preprocessing methods:

--> The Percentage Categorical Pruned (PCP) merges all least frequent levels (summing up to "perc" percent) into a single level as presented in (https://doi.org/10.1109/IJCNN.2019.8851888), which, for example, can be "Others" category. It can be useful when dealing with several amounts of categorical information (e.g., city data).

An example of this can be viewed by the following pdf:

View PDF.

Which the 1,000 highest frequency values (decreasing order) for the user city attribute for the TEST traffic data (which contains a total of 10,690 levels). For this attribute and when , PCP selects only the most frequent 688 levels (dashed vertical line) merging the other 10,002 infrequent levels into the "Others" label.

This method results in 689 binary inputs, which is much less than the 10690 binary inputs required by the standard one-hot transform (reduction of percentage points).

--> The Inverse Document Frequency (IDF) codifies the categorical levels into frequency values, where the closer to 0 means, the more frequent it is (https://ieeexplore.ieee.org/document/8710472).

--> Finally it also has implemented a simpler standard One-Hot-Encoding method.

It is possible to apply these transformations to specific columns only instead of the full dataset (follow the example).

Installation

Stable Version

To install this package please run the following command

pip install cane

Beta Version

Which in this version will contain pre-release versions of Cane that have new function which the stable version has not, and allow the users for their feedback and usage.

BETA Version

[x] - New function called multicolumn (for PCP and IDF only). This function will aggregate 2 or more columns into a single one and apply the transformation to it. Afterwards it will map the transformation obtained into the disaggregated columns.

More to come!

pip install cane==0.0.1.7.7b1

Suggestions and feedback

Any feedback will be appreciated. For questions and other suggestions contact [e-mail]

Example

import pandas as pd
import cane
import timeit
x = [k for s in ([k] * n for k, n in [('a', 30000), ('b', 50000), ('c', 70000), ('d', 10000), ('e', 1000)]) for k in s]
df = pd.DataFrame({f'x{i}' : x for i in range(1, 130)})

dataPCP = cane.pcp(df)  # uses the PCP method and only 1 core with perc == 0.05 for all columns
dataPCP = cane.pcp(df, n_coresJob=2)  # uses the PCP method and only 2 cores for all columns
dataPCP = cane.pcp(df, n_coresJob=2,disableLoadBar = False)  # With Progress Bar for all columns
dataPCP = cane.pcp(df, n_coresJob=2,disableLoadBar = False, columns_use = ["x1","x2"])  # With Progress Bar and specific columns



#dicionary with the transformed data

dicionary = cane.dic_pcp(dataPCP)
print(dicionary)

dataIDF = cane.idf(df)  # uses the IDF method and only 1 core for all columns 
dataIDF = cane.idf(df, n_coresJob=2)  # uses the IDF method and only 2 core for all columns
dataIDF = cane.idf(df, n_coresJob=2,disableLoadBar = False)  # With Progress Bar for all columns
dataIDF = cane.idf(df, n_coresJob=2,disableLoadBar = False, columns_use = ["x1","x2"]) # specific columns
dataIDF = cane.idf_multicolumn(df, columns_use = ["x1","x2"])  # aplication of specific multicolumn setting IDF


dataH = cane.one_hot(df)  # without a column prefixer
dataH2 = cane.one_hot(df, column_prefix='column')  # it will use the original column name prefix
# (useful for when dealing with id number columns)
dataH3 = cane.one_hot(df, column_prefix='customColName')  # it will use a custom prefix defined by
# the value of the column_prefix
dataH4 = cane.one_hot(df, column_prefix='column', n_coresJob=2)  # it will use the original column name prefix
# (useful for when dealing with id number columns)
# with 2 cores

dataH4 = cane.one_hot(df, column_prefix='column', n_coresJob=2
                      ,disableLoadBar = False)  # With Progress Bar Active with 2 cores

dataH4 = cane.one_hot(df, column_prefix='column', n_coresJob=2
                      ,disableLoadBar = False,columns_use = ["x1","x2"])  # With Progress Bar specific columns!



#specific example with multicolumn BETA ONLY!
x2 = [k for s in ([k] * n for k, n in [('a', 50),
                                       ('b', 10),
                                       ('c', 20),
                                       ('d', 15), 
                                       ('e', 5)]) for k in s]

x3 = [k for s in ([k] * n for k, n in [('a', 40),
                                       ('b', 20),
                                       ('c', 1),
                                       ('d', 1), 
                                       ('e', 38)]) for k in s]
df2 = pd.concat([pd.DataFrame({f'x{i}' : x2 for i in range(1, 3)}),pd.DataFrame({f'y{i}' : x3 for i in range(1, 3)})], axis=1)
dataPCP = cane.pcp(df2, n_coresJob=2,disableLoadBar = False)
print("normal PCP \n",dataPCP)
dataPCP2 = cane.pcp_multicolumn(df2, columns_use = ["x1","y1"])  # aplication of specific multicolumn setting PCP
print("multicolumn PCP \n",dataPCP2)

dataIDF = cane.idf(df2, n_coresJob=2,disableLoadBar = False, columns_use = ["x1","y1"]) # specific columns
print("normal idf \n",dataIDF)
dataIDF2 = cane.idf_multicolumn(df2, columns_use = ["x1","y1"])  # aplication of specific multicolumn setting IDF
print("multicolumn idf \n",dataIDF2)



#Time Measurement in 10 runs
print("Time Measurement in 10 runs (unicore)")
OT = timeit.timeit(lambda:cane.one_hot(df, column_prefix='column', n_coresJob=1),number = 10)
IT = timeit.timeit(lambda:cane.idf(df),number = 10)
PT = timeit.timeit(lambda:cane.pcp(df),number = 10)
print("One-Hot Time:",OT)
print("IDF Time:",IT)
print("PCP Time:",PT)

#Time Measurement in 10 runs (multicore)
print("Time Measurement in 10 runs (multicore)")
OTM = timeit.timeit(lambda:cane.one_hot(df, column_prefix='column', n_coresJob=10),number = 10)
ITM = timeit.timeit(lambda:cane.idf(df,n_coresJob=10),number = 10)
PTM = timeit.timeit(lambda:cane.pcp(df,n_coresJob=10),number = 10)
print("One-Hot Time Multicore:",OTM)
print("IDF Time Multicore:",ITM)
print("PCP Time Multicore:",PTM)