CaSQ: Celldesigner as Sbml-Qual
Project description
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CaSQ converts CellDesigner models to Boolean models encoded in SBML-Qual with a rather strict semantics defined in a submitted article.
Install
CaSQ is provided as a Python (>= 3.5) package, you can install it from the Python package index with pip, conda or your Python package manager of choice:
$ pip3 install casq
Usage
Just follow the instructions:
$ casq --help usage: casq [-h] [-v] [-d] [-c] [-s] [-r S] [infile] [outfile] Convert CellDesigner models to SBML-qual with a rather strict semantics. Copyright (C) 2019-2020 Sylvain.Soliman@inria.fr GPLv3 positional arguments: infile CellDesigner File outfile SBML-Qual File optional arguments: -h, --help show this help message and exit -v, --version show program's version number and exit -d, --debug Display a lot of debug information -c, --csv Store the species information in a separate CSV file -s, --sif Store the influence information in a separate SIF file -r S, --remove S Delete connected components in the resulting model if their size is smaller than S. A negative S leads to keep only the biggest(s) connected component(s)
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