catbridge 0.4

CAT Bridge (Compounds And Transcripts Bridge) is a robust tool built with the goal of uncovering biosynthetic mechanisms in multi-omics data, such as identifying genes potentially involved in compound synthesis by incorporating metabolomics and transcriptomics data.

CAT Bridge: A Versatile Tool for Multi-Omics Analysis

Overview

CAT Bridge (Compounds And Transcripts Bridge) is a robust tool built with the goal of uncovering biosynthetic mechanisms in multi-omics data, such as identifying genes potentially involved in compound synthesis by incorporating metabolomics and transcriptomics data.

One of the key features of CAT Bridge is its custom-built design for handling multi-mics time series data - a niche that has seen a dearth of dedicated tools till now.

And CAT Bridge is integrated with GPT 3.5 Turbo integration to help users dive deeper into the complex biological mechanisms at play.

Visualisation is key to understanding complex data. That's why CAT Bridge also includes a comprehensive suite of visualization capabilities to help you understand, explore, and present your findings more intuitively and effectively.

At the heart of CAT Bridge lies a data-driven algorithm, theoretically enabling its application across a wide spectrum of multi-omics data showcasing causal relationships. However, so far, we've tested this only between metabolome-transcriptome and metabolome-metabolome interactions.

Installation

Python dependencies can be installed using pip (from the Unix terminal) pip install catbridge

Contact

The package is developed and maintained by Bowen Yang ([e-mail]). Please, reach us for problems, comments or suggestions.