Fast on-demand sampling from categorical distributions

## Project description

Categorical Sampler

-----

Install from pip: `pip install categorical-sampler`

Let’s generate a probability distribution to get us started. First, sample a bunch of random numbers to determine probability “scores”.

>>> from random import random

>>> k = 10**6

>>> scores = [random() for i in range(k)]

>>> total = sum(scores)

>>> probabilities = [s / total for s in scores]

We've normalized the scores to sum to 1, i.e. make

them into proper probabilities, but actually the categorical sampler will do that for us, so it’s not necessary:

>>> from categorical import Categorical as C

>>> my_sampler = C(scores)

>>> print my_sampler.sample()

487702

Comparing to numpy, assuming we draw 1000 individual samples *individually*:

>>> from numpy.random import choice

>>> import time

>>>

>>> def time_numpy():

>>> start = time.time()

>>> for i in range(1000):

>>> choice(k, p=probabilities)

>>> print time.time() - start

>>>

>>> def time_my_alias():

>>> start = time.time()

>>> for i in range(1000):

>>> my_sampler.sample()

>>> print time.time() - start

>>>

>>> time_numpy()

31.0555009842

>>> time_my_alias()

0.0127031803131

Get the actual probability of a given outcome:

>>> my_sampler.get_probability(487702)

1.0911282101090306e-06

-----

Install from pip: `pip install categorical-sampler`

Let’s generate a probability distribution to get us started. First, sample a bunch of random numbers to determine probability “scores”.

>>> from random import random

>>> k = 10**6

>>> scores = [random() for i in range(k)]

>>> total = sum(scores)

>>> probabilities = [s / total for s in scores]

We've normalized the scores to sum to 1, i.e. make

them into proper probabilities, but actually the categorical sampler will do that for us, so it’s not necessary:

>>> from categorical import Categorical as C

>>> my_sampler = C(scores)

>>> print my_sampler.sample()

487702

Comparing to numpy, assuming we draw 1000 individual samples *individually*:

>>> from numpy.random import choice

>>> import time

>>>

>>> def time_numpy():

>>> start = time.time()

>>> for i in range(1000):

>>> choice(k, p=probabilities)

>>> print time.time() - start

>>>

>>> def time_my_alias():

>>> start = time.time()

>>> for i in range(1000):

>>> my_sampler.sample()

>>> print time.time() - start

>>>

>>> time_numpy()

31.0555009842

>>> time_my_alias()

0.0127031803131

Get the actual probability of a given outcome:

>>> my_sampler.get_probability(487702)

1.0911282101090306e-06

## Project details

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Filename, size & hash SHA256 hash help | File type | Python version | Upload date |
---|---|---|---|

categorical-0.1.4.tar.gz (4.4 kB) Copy SHA256 hash SHA256 | Source | None | Jul 14, 2016 |