cbc 1.0.3

Count Blood Cells

Count Blood Cells

Count red, white blood cells to detect various diseases such as blood cancer (leukemia), lower red blood cells count (anemia)...

Table of Contents

• Project Structure
• Install
• Usage
• Develop
• License

Project Structure

cbc/
|-- data/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- docs/...
|
|-- models/...
|
|-- output/
|   |-- plt/...
|   |-- rbc/...
|   |-- wbc/...
|
|-- AUTHORS
|-- cbc
|-- LICENSE
|-- README.md
|-- TODO.md
|-- requirements.txt 
|-- setup.py

Install

• Install straight from PyPI using pip:

$ pip install cbc

Usage

Please read cbc --help before using it -o flag is optional (defaults to out/ directory)

• Count blood cells (-r for red and -w for white):

$ cbc -r <blood-cell-image>

• Predict red blood cells (use Circle Hough Tranform and Connected Component Labeling with otsu's thresholding):

$ cbc -r -CHT -CCL -t <blood-cell-image>

• Predict white blood cells (with custom output directory):

$ cbc -w <blood-cell-image> -o outdir/

Develop

• Download the project:

$ git clone https://github.com/nemo256/cbc
$ cd cbc 

• Activate virtual environment:

$ python -m venv venv
$ source venv/bin/activate
$ pip install -r requirements.txt

• Now just adapt the code to your needs and then run using the command:

$ chmod +x cbc
$ ./cbc

License

• Please read cbc/LICENSE