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Brief Description

The cell-tracking-BC project proposes a set of classes and tools for the processing and analysis of cell microscopy time-lapses/videos, typically in live-cell imaging. Its purpose is to serve as a basis for the development of computational pipelines and applications, for example to detect cell-related events such as division or death.

Installation

The cell-tracking-BC project is published on the Python Package Index (PyPI) at: https://pypi.org/project/cell-tracking-bc. It requires version 3.8, or newer, of the interpreter. It should be installable from Python distribution platforms or Integrated Development Environments (IDEs). Otherwise, it can be installed from a command-line console:

  • For all users, after acquiring administrative rights:
    • First installation: pip install cell-tracking-bc

    • Installation update: pip install --upgrade cell-tracking-bc

  • For the current user (no administrative rights required):
    • First installation: pip install --user cell-tracking-bc

    • Installation update: pip install --user --upgrade cell-tracking-bc

Documentation

The documentation is extremely limited at the moment. It currently takes the form of a small PDF document. The tools pdoc3 and pydoctor are also used to generate an API documentation.

Thanks

The project is developed with PyCharm Community.

The development relies on several open-source packages (see install_requires in setup.py).

The code is formatted by Black, The Uncompromising Code Formatter.

The imports are ordered by isort… your imports, so you don’t have to.

Metadata

Release files for cell-tracking-bc 2025.1

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2025.1 This release

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