TBD
Project description
Inferring cell-cell interactions from transcriptomes with cell2cell
Installation
Create a new conda environment:
conda create -n cell2cell -y python=3.7 jupyter
Activate that environment:
conda activate cell2cell
Then, install cell2cell:
pip install cell2cell
Examples
- A toy example containing main standard analyses is available here
- An example of using cell2cell to infer cell-cell interactions across the whole body of C. elegans is available here
- A capsule containing jupyter notebooks for running Tensor-cell2cell on datasets of COVID-19 an the embryonic development of C. elegans is available in codeocean.com
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