cell2cell 0.4.4

TBD

Inferring cell-cell interactions from transcriptomes with cell2cell

Installation

Create a new conda environment:

conda create -n cell2cell -y python=3.7 jupyter

Activate that environment:

conda activate cell2cell

Then, install cell2cell:

pip install cell2cell

Examples

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• A toy example containing main standard analyses is available here
• An example of using cell2cell to infer cell-cell interactions across the whole body of C. elegans is available here

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• A capsule containing jupyter notebooks for running Tensor-cell2cell on datasets of COVID-19 an the embryonic development of C. elegans is available in codeocean.com

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