Skip to main content

UCSC Cellbrowser, an interactive browser for single cell data. Includes converters and basic pipelines for text files, Seurat, Scanpy and Cellranger.

Project description

This is a package with a script that creates a web-based viewer for single cell data. The main script is cbBuild. It accepts an expression matrix and cell annotation (meta data) file. It creates an index.html, various .json and binary data files, copies javascript files into the same directory. The resulting webpage allows to move between datasets and to color the plot by gene or annotation.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

cellbrowser-0.5.3.tar.gz (764.9 kB view hashes)

Uploaded Source

Built Distributions

cellbrowser-0.5.3-py3-none-any.whl (782.8 kB view hashes)

Uploaded Python 3

cellbrowser-0.5.3-py2-none-any.whl (784.1 kB view hashes)

Uploaded Python 2

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page