Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
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Project description
cellcharter
Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
Getting started
Please refer to the documentation. In particular, the
Installation
You need to have Python 3.8 or newer installed on your system. If you don't have Python installed, we recommend installing Miniconda.
There are several alternative options to install cellcharter:
- Install the latest development version:
pip install git+https://github.com/marcovarrone/cellcharter.git@main
Release notes
See the changelog.
Contact
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
Citation
t.b.a
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