cellenics-api 0.0.2

For programmatic upload of files to Cellencis

cellenics-api

About

This python package provides an easy way to create projects and upload samples into Cellenics.

Installation

To install the package execute the following line: pip install cellenics_api

Usage

In order to use the package you first need to create an account in Cellenics (https://scp.biomage.net/) if you don't have one yet.

Then the package is used in the following way:

import cellenics_api

# 1. Authenticate user and create a connection tunnel with the api
connection = cellenics_api.Connection('email', 'password')

# 2. Create an experiment
experiment_id = connection.create_experiment()

# 3. Upload samples associated with the experiment
connection.upload_samples(experiment_id, 'local/path/to/samples')

Once the upload is complete you can navigate to Cellenics and process your project there.