Toolset for single-cell trajectory modeling.
Project description
A toolset for single-cell trajectory modeling.
References
Copperman, Jeremy, Sean M. Gross, Young Hwan Chang, Laura M. Heiser, and Daniel M. Zuckerman. “Morphodynamical cell state description via live-cell imaging trajectory embedding.” Communications Biology 6, no. 1 (2023): 484.
Copperman, Jeremy, Ian C. Mclean, Sean M. Gross, Young Hwan Chang, Daniel M. Zuckerman, and Laura M. Heiser. “Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change.” bioRxiv (2024): 2024-01.
Free software: MIT license
Documentation: https://jcopperm.github.io/celltraj.
Morphodynamical Trajectory Embedding tutorial: https://github.com/jcopperm/celltraj/blob/main/tutorials/trajectory_embedding.ipynb
MMIST: Molecular and Morphodynamics-Integrated Single-cell Trajectories tutorial (WIP)
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
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