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Fast generation of a core genome among bacterial strains

Project description

External Dependencies

The following must be available in your $PATH. These programs will be automatically installed with the conda package.

Installation

  1. Create a new conda environment (optional, but strongly recommended)
conda env create -n centreseq python=3.6
  1. Install via bioconda
conda install -c bioconda centreseq  # Coming soon

Usage

Usage: centreseq [OPTIONS] COMMAND [ARGS]...

  centreseq builds an annotated core genome using assemblies as input.

Options:
  --help  Show this message and exit.

Commands:
  core  Given an input directory containing assemblies, establishes a core
        genome
  tree  Produces output for phylogenetic tree software

Project details


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Files for centreseq, version 0.2.3
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