An Intergrated Pipeline For cfDNA Sequencing Data Analysis
Project description
# cfDNA-Pipeline Cell Free DNA Sequencing Analysis Pipeline
# News version 0.0.1, 2019.06.01 The first test version.
version 0.0.4, 2019.11.24 Add functions to check the reference folder when setting configure.
version 0.0.8, 2020.06.12 Add pipeline analysis function. Include WGS/WGBS paired/single data pipeline and case control comparison analysis pipeline.
version 0.0.9, 2020.06.17 Delete useless folders, remove stepBase2.
version 0.1.0, 2020.06.22 Add pipeline for basic WGS/WGBS and case/control analysis.
version 0.1.1, 2020.06.22 Add qualimap function.
version 0.1.3, 2020.12.01 Archive some functions.
version 0.1.5, 2021.01.05 Pre release.
version 0.1.6, 2021.01.05 Pre release again.
version 0.1.7, 2021.01.11 update report
version 0.1.8, 2021.01.11 fix virus genome error
version 0.1.9, 2021.01.15 test data check
version 1.0.0, 2021.01.16 release
version 1.0.1, 2021.01.16 add nucleosome positioning and tissue of origin function
version 1.0.2, 2021.04.26 update readme and tutorial, fix some bugs
version 1.0.3, 2021.05.07 update readme and tutorial, remove some temp codes
version 1.0.4, 2022.01.18 update arm-level cnv multicore error
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