cfDNApipe 1.0.4

An Intergrated Pipeline For cfDNA Sequencing Data Analysis

# cfDNA-Pipeline Cell Free DNA Sequencing Analysis Pipeline

# News version 0.0.1, 2019.06.01 The first test version.

version 0.0.4, 2019.11.24 Add functions to check the reference folder when setting configure.

version 0.0.8, 2020.06.12 Add pipeline analysis function. Include WGS/WGBS paired/single data pipeline and case control comparison analysis pipeline.

version 0.0.9, 2020.06.17 Delete useless folders, remove stepBase2.

version 0.1.0, 2020.06.22 Add pipeline for basic WGS/WGBS and case/control analysis.

version 0.1.1, 2020.06.22 Add qualimap function.

version 0.1.3, 2020.12.01 Archive some functions.

version 0.1.5, 2021.01.05 Pre release.

version 0.1.6, 2021.01.05 Pre release again.

version 0.1.7, 2021.01.11 update report

version 0.1.8, 2021.01.11 fix virus genome error

version 0.1.9, 2021.01.15 test data check

version 1.0.0, 2021.01.16 release

version 1.0.1, 2021.01.16 add nucleosome positioning and tissue of origin function

version 1.0.2, 2021.04.26 update readme and tutorial, fix some bugs

version 1.0.3, 2021.05.07 update readme and tutorial, remove some temp codes

version 1.0.4, 2022.01.18 update arm-level cnv multicore error