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Chromatogram File Utils

Project description

cfutils

Chromatogram File Utils

for sanger sequencing data visualizing, alignment, mutation calling, and trimming etc.

Demo

plot chromatogram with mutation

How to install?

form pypi

(use this way ONLY, if you don't know what't going on)

pip install cfutils
$ python
Python 3.6.5 (default, Apr 14 2018, 13:17:30)
[GCC 7.3.1 20180406] on linux

>>>

manipulate the soource code

clone from github

git clone git@github.com:yech1990/cfutils.git 

install dependance

make init

do unittest

make test

How to use?

import cfutils as cf

ChangeLog

  • build as python package for pypi
  • fix bug that highlihgting wrong base

TODO

  • call mutation by alignment and plot Chromatogram graphic
  • add a doc
  • change xaxis by peak location

Project details


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Source Distribution

cfutils-0.0.0.dev20.tar.gz (14.4 MB view hashes)

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