CGE Core Module version 2 released
The cgecore module have been updated to version 2.0.0. Despite earlier announcements, we have decided to try and keep most of the legacy functionality in version 2. All CGE tools should work with this updated version. However, we did not have the resources to test it with all CGE tools. This version includes all functionality from the cgelib package version 0.7.5. The cgelib package has been deprecated and all functionality has been moved to the cgecore package. The cgecore package is now the one-stop core module for the Center for Genomic Epidemiology.
Please note that some parts of the added functionality is still in development and tests are far from complete.
cge_core_module
Core module for the Center for Genomic Epidemiology
This module contains classes and functions needed to run the service wrappers and pipeline scripts
The pypi project can be found here: https://pypi.org/project/cgecore/
How to update:
- Make changes to the modules
- Bump the version number accordingly in cgecore/init.py
- Install package locally
- Test the changes locally (for both python2 and python3)
- Distribute to Pypi
Install package locally
python2 setup.py install
python3 setup.py install
Distribute to PyPi
python3 setup.py sdist bdist_wheel
twine upload dist/*
deprecated:
python setup.py sdist upload -r pypi
Metadata
Release files for cgecore 2.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| cgecore-2.0.1.tar.gz | 236.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| cgecore-2.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 508.5 kB
Release files / cgecore-2.0.1.tar.gz
| Download URL | cgecore-2.0.1.tar.gz |
|---|---|
| Size | 236.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.11.1
|
Release files / cgecore-2.0.1-py3-none-any.whl
| Download URL | cgecore-2.0.1-py3-none-any.whl |
|---|---|
| Size | 271.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.1.1 CPython/3.11.1
|
