Tools for representing genomes in sage
Project description
Circular genome tools (cgt)
A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for converting between representations as well as visualisations using matplotlib.
To install and use this package, paste the following command in your terminal
sage -pip install cgt
and use import cgt
in a sage script or environment.
Note: you will need to at least have Sage version 9.0 installed, and have the GAP package repsn
installed for the copy of GAP that sits inside Sage. If you used a package manager to install Sage you likely have an old version. I will add some installation instructions here soon!
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