chaste-codegen 0.5.0

Code generation for cardiac Chaste

Code generation for cardiac Chaste

The chaste_codegen module takes CellML models as input, via cellmlmanip to read and manipulate them, then uses templating to generate C++ code.

The jinja2 templating engine is used.

Installing

We recommend installing chaste_codegen in a virtual environment (using virtualenv or conda)

Users install chaste_codegen using pip.

pip install chaste_codegen

Using chaste_codegen

After installation, chaste_codegen can be called using the chaste_codegen command:

usage: chaste_codegen [-h] [--version] [-t TYPE] [-o OUTFILE]
                      [--use-analytic-jacobian] [-c CLASS_NAME] [-y]
                      [--use-modifiers]
                      cellml_file

For more information about the available options call chaste_codegen -h

Release notes

For release notes see RELEASE.md

Documentation

API documentation explaining how to use cellmlmanip can be found on readthedocs

Contributing

For guidelines on contributing to chaste_codegen, please see CONTRIBUTING.md.