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Service which polls the database for subwell images which need to have the chimp detector run on them.

Project description

chimpflow

Service which polls the database for subwell images which need to have the chimp detector run on them.

Uses xchembku for database interaction.

For documentation see: https://diamondlightsource.github.io/chimpflow

Model file for xchem-chimp

The model file is saved in::

https://gitlab.diamond.ac.uk/xchem/xchem-chimp-models

This file is too large for github.

For GitHub pytest to find the file in its CI/CD Actions, this file has been uploaded to zenodo:

https://zenodo.org/record/7810708/2022-12-07_CHiMP_Mask_R_CNN_XChem_50eph_VMXi_finetune_DICT_NZ.pytorch

The tests/conftest.py fetches this file automatically.

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