chmutil 0.5.1

Utility package to run CHM jobs on clusters

chmutil

Utility package to run Cascaded Hierarchical Model (CHM) jobs on clusters.

For more information visit our wiki page

Tools

• chmrunner.py – Runs CHM job with specific jobid

• createchmjob.py – Creates a set of CHM jobs to process a set of images

• checkchmjob.py – Generates script that can be used to run CHM jobs created by createchmjob.py on various compute clusters (Gordon, Comet, & Rocce)

Dependencies

• argparse

• configparser

• Pillow

• CHM singularity image (not required to build this software, but is needed to run the jobs)

Compatibility

• Should work on Python 2.7 & 3+ on Linux distributions

Installation

pip install chmutil

Usage

# creates a job assuming images are in ./images and ./trainedmodel has
# chm model
createchmjob.py ./images ./trainedmodel myrun --cluster rocce

License

See LICENSE.txt

Bugs

Please report them here

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.5.1 (2017-01-12)

• Fixed account not being put into runjobs.gordon and runmerge.gordon. Issue #11

• Fixed errors in checking job status examples in readme.txt created by createchmjob.py. Issue #12

0.5.0 (2017-01-11)

• First release on PyPI.